Plots

class emdb.models.plots.BasePlot(*, title: str, x_label: str, y_label: str)[source]

Bases: BaseModel, ABC

plot(title: str | None = None, x_label: str | None = None, y_label: str | None = None)[source]

save(filepath: str, title: str | None = None, x_label: str | None = None, y_label: str | None = None)[source]

model_config: ClassVar[ConfigDict] = {}: Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

title: str

x_label: str

y_label: str

class emdb.models.plots.PlotDataHistogram(*, title: str, x_label: str, y_label: str, values: List[float], counts: List[int])[source]

Bases: BasePlot

counts: List[int]

model_config: ClassVar[ConfigDict] = {}: Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

values: List[float]

class emdb.models.plots.PlotDataXY(*, title: str, x_label: str, y_label: str, x: List[float], y: List[float], recommended_contour_level: Dict[str, float] | None = None, resolution: float | None = None)[source]

Bases: BasePlot

model_config: ClassVar[ConfigDict] = {}: Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

recommended_contour_level: Dict[str, float] | None

resolution: float | None

x: List[float]

y: List[float]

class emdb.models.plots.PlotFSC(*, title: str, x_label: str, y_label: str, type: str, pdb_id: str | None = None, fsc: List[float], onebit: List[float] | None = None, halfbit: List[float] | None = None, cutoff_0_5: List[float] | None = None, cutoff_0_143: List[float] | None = None, level: List[float], angstrom_resolution: List[float] | None = None, phaserandomization: List[float] | None = None, fsc_masked: List[float] | None = None, fsc_corrected: List[float] | None = None, intersections: Dict, feature_zones: Dict | None = None, resolution: float | None = None)[source]

Bases: BasePlot

angstrom_resolution: List[float] | None

cutoff_0_143: List[float] | None

cutoff_0_5: List[float] | None

feature_zones: Dict | None

fsc: List[float]

fsc_corrected: List[float] | None

fsc_masked: List[float] | None

halfbit: List[float] | None

intersections: Dict

level: List[float]

model_config: ClassVar[ConfigDict] = {}: Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

onebit: List[float] | None

pdb_id: str | None

phaserandomization: List[float] | None

resolution: float | None

type: str

class emdb.models.plots.PlotVolumeEstimate(*, title: str, x_label: str, y_label: str, volume: List[float], level: List[float], estimated_volume: float, recommended_contour_level: Dict[str, float] | None = None)[source]

Bases: BasePlot

estimated_volume: float

level: List[float]

model_config: ClassVar[ConfigDict] = {}: Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].

recommended_contour_level: Dict[str, float] | None

volume: List[float]